| |
|
|
|
Registro Completo |
|
Biblioteca(s): |
Embrapa Agroenergia. |
|
Data corrente: |
23/09/2019 |
|
Data da última atualização: |
23/09/2019 |
|
Tipo da produção científica: |
Resumo em Anais de Congresso |
|
Autoria: |
DAVID, M. F. L.; SILVA, V. N. B.; SILVA, E. A.; VICENTE, T. F. S.; SOUSA, C. A. F.; PEDROSA, E. M. R.; SOUZA JUNIOR, M. T.; GUIMARAES, L. M. P. |
|
Afiliação: |
Universidade Federal Rural e Pernambuco; Universidade Federal de Lavras; Universidade Federal de Lavras; Universidade Federal Rural e Pernambuco; Universidade Federal Rural e Pernambuco; MANOEL TEIXEIRA SOUZA JUNIOR, CNPAE; Universidade Federal Rural e Pernambuco. |
|
Título: |
Respostas do parasitismo de Meloidogyne spp. em Setaria viridis acesso A10.1. |
|
Ano de publicação: |
2019 |
|
Fonte/Imprenta: |
In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 51., 2109, Recife. Os avanços da Fitopatologia na Era Genômica: anais. Recife: SBF: UFPRE/PPGF, 2019. |
|
Páginas: |
p. 535. |
|
Idioma: |
Português |
|
Thesagro: |
Meloidogyne spp; Parasitismo. |
|
Categoria do assunto: |
-- |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/202236/1/MANOEL-Respostas-parasitismo.pdf
|
|
Marc: |
LEADER 00750nam a2200217 a 4500
001 2112388
005 2019-09-23
008 2019 bl uuuu u00u1 u #d
100 1 $aDAVID, M. F. L.
245 $aRespostas do parasitismo de Meloidogyne spp. em Setaria viridis acesso A10.1.$h[electronic resource]
260 $aIn: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 51., 2109, Recife. Os avanços da Fitopatologia na Era Genômica: anais. Recife: SBF: UFPRE/PPGF$c2019
300 $ap. 535.
650 $aMeloidogyne spp
650 $aParasitismo
700 1 $aSILVA, V. N. B.
700 1 $aSILVA, E. A.
700 1 $aVICENTE, T. F. S.
700 1 $aSOUSA, C. A. F.
700 1 $aPEDROSA, E. M. R.
700 1 $aSOUZA JUNIOR, M. T.
700 1 $aGUIMARAES, L. M. P.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Agroenergia (CNPAE) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
|
Registro Completo
|
Biblioteca(s): |
Embrapa Gado de Corte; Embrapa Gado de Leite. |
|
Data corrente: |
23/12/2020 |
|
Data da última atualização: |
06/02/2024 |
|
Tipo da produção científica: |
Artigo em Periódico Indexado |
|
Circulação/Nível: |
A - 1 |
|
Autoria: |
PERIPOLLI, E.; REIMER, C.; HA, NGOC-THUY; GEIBEL. J.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SIMIANER, H.; SILVA, M. V. G. B. |
|
Afiliação: |
Elisa Peripolli; Christian Reimer; Ngoc-Thuy Ha; Johannes Geibel; MARCO ANTONIO MACHADO, CNPGL; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; ANDREA ALVES DO EGITO, CNPGC; Fernando Baldi; Henner Simianer; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL. |
|
Título: |
Genome-wide detection of signatures of selection in indicine and Brazilian locally adapted taurine cattle breeds using wholegenome re-sequencing data. |
|
Ano de publicação: |
2020 |
|
Fonte/Imprenta: |
BMC Genomics, v. 21, article 624, 2020. |
|
DOI: |
https://doi.org/10.1186/s12864-020-07035-6 |
|
Idioma: |
Inglês |
|
Conteúdo: |
Background: The cattle introduced by European conquerors during the Brazilian colonization period were exposed to a process of natural selection in different types of biomes throughout the country, leading to the development of locally adapted cattle breeds. In this study, whole-genome re-sequencing data from indicine and Brazilian locally adapted taurine cattle breeds were used to detect genomic regions under selective pressure. Within-population and cross-population statistics were combined separately in a single score using the de-correlated composite of multiple signals (DCMS) method. Putative sweep regions were revealed by assessing the top 1% of the empirical distribution generated by the DCMS statistics. Results: A total of 33,328,447 biallelic SNPs with an average read depth of 12.4X passed the hard filtering process and were used to access putative sweep regions. Admixture has occurred in some locally adapted taurine populations due to the introgression of exotic breeds. The genomic inbreeding coefficient based on runs of homozygosity (ROH) concurred with the populations? historical background. Signatures of selection retrieved from the DCMS statistics provided a comprehensive set of putative candidate genes and revealed QTLs disclosing cattle production traits and adaptation to the challenging environments. Additionally, several candidate regions overlapped with previous regions under selection described in the literature for other cattle breeds. Conclusion: The current study reported putative sweep regions that can provide important insights to better understand the selective forces shaping the genome of the indicine and Brazilian locally adapted taurine cattle breeds. Such regions likely harbor traces of natural selection pressures by which these populations have been exposed and may elucidate footprints for adaptation to the challenging climatic conditions. MenosBackground: The cattle introduced by European conquerors during the Brazilian colonization period were exposed to a process of natural selection in different types of biomes throughout the country, leading to the development of locally adapted cattle breeds. In this study, whole-genome re-sequencing data from indicine and Brazilian locally adapted taurine cattle breeds were used to detect genomic regions under selective pressure. Within-population and cross-population statistics were combined separately in a single score using the de-correlated composite of multiple signals (DCMS) method. Putative sweep regions were revealed by assessing the top 1% of the empirical distribution generated by the DCMS statistics. Results: A total of 33,328,447 biallelic SNPs with an average read depth of 12.4X passed the hard filtering process and were used to access putative sweep regions. Admixture has occurred in some locally adapted taurine populations due to the introgression of exotic breeds. The genomic inbreeding coefficient based on runs of homozygosity (ROH) concurred with the populations? historical background. Signatures of selection retrieved from the DCMS statistics provided a comprehensive set of putative candidate genes and revealed QTLs disclosing cattle production traits and adaptation to the challenging environments. Additionally, several candidate regions overlapped with previous regions under selection described in the literature for other cattle breeds. Conclusion: The cu... Mostrar Tudo |
|
Palavras-Chave: |
Bos taurus indicus; Bos taurus taurus; Local adaptation; Next-generation sequencing; Signatures of selection. |
|
Categoria do assunto: |
-- |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1129869/1/Genome-wide-detection-of-signatures-of-selection-in-indicine-and-Brazilian.pdf
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/219647/1/34-Genome-wide.pdf
|
|
Marc: |
LEADER 02861naa a2200301 a 4500
001 2129869
005 2024-02-06
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1186/s12864-020-07035-6$2DOI
100 1 $aPERIPOLLI, E.
245 $aGenome-wide detection of signatures of selection in indicine and Brazilian locally adapted taurine cattle breeds using wholegenome re-sequencing data.$h[electronic resource]
260 $c2020
520 $aBackground: The cattle introduced by European conquerors during the Brazilian colonization period were exposed to a process of natural selection in different types of biomes throughout the country, leading to the development of locally adapted cattle breeds. In this study, whole-genome re-sequencing data from indicine and Brazilian locally adapted taurine cattle breeds were used to detect genomic regions under selective pressure. Within-population and cross-population statistics were combined separately in a single score using the de-correlated composite of multiple signals (DCMS) method. Putative sweep regions were revealed by assessing the top 1% of the empirical distribution generated by the DCMS statistics. Results: A total of 33,328,447 biallelic SNPs with an average read depth of 12.4X passed the hard filtering process and were used to access putative sweep regions. Admixture has occurred in some locally adapted taurine populations due to the introgression of exotic breeds. The genomic inbreeding coefficient based on runs of homozygosity (ROH) concurred with the populations? historical background. Signatures of selection retrieved from the DCMS statistics provided a comprehensive set of putative candidate genes and revealed QTLs disclosing cattle production traits and adaptation to the challenging environments. Additionally, several candidate regions overlapped with previous regions under selection described in the literature for other cattle breeds. Conclusion: The current study reported putative sweep regions that can provide important insights to better understand the selective forces shaping the genome of the indicine and Brazilian locally adapted taurine cattle breeds. Such regions likely harbor traces of natural selection pressures by which these populations have been exposed and may elucidate footprints for adaptation to the challenging climatic conditions.
653 $aBos taurus indicus
653 $aBos taurus taurus
653 $aLocal adaptation
653 $aNext-generation sequencing
653 $aSignatures of selection
700 1 $aREIMER, C.
700 1 $aHA, NGOC-THUY
700 1 $aGEIBEL. J.
700 1 $aMACHADO, M. A.
700 1 $aPANETTO, J. C. do C.
700 1 $aEGITO, A. A. do
700 1 $aBALDI, F.
700 1 $aSIMIANER, H.
700 1 $aSILVA, M. V. G. B.
773 $tBMC Genomics$gv. 21, article 624, 2020.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Gado de Leite (CNPGL) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
Fechar
|
|
|
Registro completo
|
Biblioteca(s): |
Catálogo Coletivo de Periódicos Embrapa; Embrapa Agroindústria Tropical; Embrapa Algodão; Embrapa Amazônia Oriental; Embrapa Arroz e Feijão; Embrapa Cerrados; Embrapa Meio Ambiente; Embrapa Meio Norte / UEP-Parnaíba; Embrapa Semiárido; Embrapa Soja; Embrapa Uva e Vinho. MenosCatálogo Coletivo de Periódicos Embrapa; Embrapa Agroindústria Tropical; Embrapa Algodão; Embrapa Amazônia Oriental; Embrapa Arroz e Feijão; Embrapa Cerrados; Embrapa Meio Ambiente; Embrapa Meio Norte / UEP-Parnaíba; Embrapa Semiárido; Embrapa Soja... Mostrar Todas |
|
Identificador: |
451 |
|
Data corrente: |
09/05/2002 |
|
Data da última atualização: |
12/05/2015 |
|
Código do título: |
5150446 |
|
ISSN: |
1046-2821 |
|
Código CCN: |
088185-6 |
|
Título e Subtítulo: |
AMERICAN ENTOMOLOGIST |
|
Título anterior: |
BULLETIN OF THE ENTOMOLOGICAL SOCIETY OF AMERICA |
|
Entidade: |
Entomological Society of America |
|
Local de publicação: |
Lanham, MD, US |
|
Periodicidade: |
Trimestral |
|
Inicio de publicação: |
1990 |
|
Coleções da unidade: |
Embrapa Agroindústria Tropical
1990 36(1-4); 1991 37(1-4); 1992 38(1-4); 1993 39(1-4); 1994 40(1, 3-4); 1995 41(1-4); 1997 43(1-4); 1998 44(1-4);
Classificação: 597.705
Embrapa Algodão
1990/96 36-37; 40(1); 41(4); 42.
Classificação: 595.705
Embrapa Amazônia Oriental
1990 36(1-4); 1991 37(1-4); 1992 38(1-4); 1997 43(1-4); 1998 44(1-4); 1999 45(1-4); 2002 48(3)
Classificação: 595.7005A1
Embrapa Arroz e Feijão
1993 39(1-4); 1994 40(1-4); 1995 41(1-4); 1996 42(1-4); 1997 43(1-3); 1999 45(1,4); 2000 46(4); 2001 47(1-2); 2002 48(3); 2007 53(1); 2008 54(1,3-4)
Embrapa Cerrados
1990 36(1-4); 1992 38(1-4); 1994 40(1-2); 1995 41(2-4); 1996 42(1-4); 1997 43(1-4); 1998 44(1-4); 2000 46(1-4); 2001 47(1-4); 2002 48(1-4); 2015 61(1)
Classificação: 595.7005
Embrapa Meio Ambiente
1993-1998 39(1, 3-4); 40(3-4); 41(1-3); 42(1-4); 43(1-4); 44(1-2)
Embrapa Meio Norte / UEP-Parnaíba
1990 36(2-4)
Classificação: 595.705
Embrapa Semiárido
1990 36(1-4); 1991 37(1-4); 1992 38(1-4); 1993 39(1-4); 1994 40(3-4); 1996 42(1).
Embrapa Soja
1977 23(3-4); 1978-79 24-25; 1990 36(1,2,3,4); 1991 37(1,2,3,4); 1992 38(1,2,3,4); 1993 39(1,2,3,4); 1994 40(1,2,3,4); 1995 41(1,2,3,4); 1996 42(1,2,3,4); 1997 43(1,2,3,4); 1998 44(1,2,3,4); 1999 45(1,2,3,4); 2000 46(1,2,3,4); 2001 47(1,2,3,4); 2002 48(1,2,3,4); 2003 49(1,2,3,4); 2004 50(1,2,3,4); 2005 51(1,2,3,4); 2006 52(1,2,3,4); 2007 53(1,2,3,4); 2008 54(1,2,3,4); 2009 55(1,2,3,4); 2010 56(1,2,3,4); 2011 57(1,2,3,4); 2012 58(1,2,3,4); 2013 59(1,2,3,4); 2014 60(1,2,3,4); 2015 61(1,2,3,4); 2016 62(1,2,3,4); 2017 63(1,3); 2018 64(1,2,3,4); 2019 65(1,2,3,4); 2020 66(1,2,3,4); 2021 67(1,3);
Classificação: 597.705
Embrapa Uva e Vinho
1990 36(1-4); 1991 37(1-4); 1992 38(1-4); 1993 39(1-4); 1994 40(1-4); 1995 41(1-4); 1996 42(1-4); 1997 43(1-4); 1998 44(1-4); 1999 45(1-4); 2002 48(3); 2008 54(3) |
|
Fechar
|
|
|
